[Poster/2021KOGO]Plant Genome Database Release 2.7: One tera base pairs plant genomes era

Owing to next generation and third generation sequencing technologies, a large
amount of plant genomes have been sequenced and released in public. To deal with
them systematically and efficiently, Plant Genome Database (PGD;
http://www.plantgenome.info/) was established and has been updated more than 4
years. Here, we announced recently updated Release 2.7 with 2,174 plant genomes of
713 species. Total length of 2,174 plant genomes is 1.065 Tbp, which has been
increased by 126 Gbp in comparison to the previous release (Release 2.6), entering 1
Tbp plant genome era. Total numbers of plant genes and ORFs are 15,815,804 and
19,545,617 from 427 genomes, respectively, which has also been increased by
4,339,606 and 5,653,593, respectively. In addition, 78,784,484 simple sequence
repeats (SSRs) were identified from 2,174 genomes using the pipeline of SSRDB
(http://ssrdb.infoboss.co.kr/). The web interface of the PGD provides plant genome
sequences, SSRs, and functional domains predicted by InterProScan. In addition, PGD
provides BLAST search with the specific datasets of each plant genome deposited in
PGD. GlobalScrap® was also implemented to analyze various information of plant
genomes, such as genome statistics, and distribution of functional domains of plant
specific genes. Taken together, PGD can be a standardized repository of plant genomes
to understand current status of plant genomes as well as an integrated platform to
conduct plant comparative genomic researches.

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2021 KOGO Winter Symposium.jpg	268,774